hIL-6·hIL-6Rα·gp130三元复合物的结构预测
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国家自然科学基金(39980036)和军事医学科学院创新启动基金资助项目.


Structural Prediction on the Compound hIL-6·hIL-6Rα·gp130
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    摘要:

    通过Delphi方法分析人白介素6(human interleukin-6,hIL-6)/人白介素6受体α亚基(human interleukin-6 receptor α subunit,hIL-6Rα)复合物、gp130(β subunit)的空间构象的表观静电分布,利用分子对接方法研究gp130与hIL-6/hIL-6Rα复合物作用形成三元复合物的空间构象,经过分子力学优化、分子动力学常温动态模拟借助分子间相互作用(范德华力、氢键、盐键等)、反应自由能理论探讨hIL-6·hIL-6Rα·gp130复合物稳定构象结合部位的结构域.分析结果表明,gp130蛋白表面富集较强的负电势,复合物hIL-6/hIL-6R一侧表面富集较强的正电势,gp130借助蛋白表面的静电作用结合hIL-6/hIL-6R复合物,介导hIL-6信号;hIL-6中的helix-C、loop-BC、loop-CD参与同gp130中的loopEF、linker、loopA′B′、loopB′C′、loopD′E′作用,hIL-6R中的loopA′B′、β-strand E′参与同gp130中的loopA′B′、β-strand E′作用.

    Abstract:

    According to the surface electronic potential distribution of the compound hIL-6/hIL-6R and gp130 was analyzed by the program Delphi, the space conformation of the tertiary compound hIL-6·hIL-6R·gp130 is studied with Docking method. The stable structure of the tertiary compound is obtained during the optimization with molecular mechanics and molecular dynamics at normal temperature. The binding domain of the stable compound was discussed by intermolecular force(including Van der Waals force, hydrogen bond, salt link, etc) and reaction free energy theory. The results showed that the surface of gp130 enriches negative charges whereas the compound hIL-6/hIL-6R positive charges, gp130 combines hIL-6/hIL-6R with surface electrostatic interaction for transduction signal, helix-C, loopBC, loopCD in hIL-6 participate in the interaction with the regions loopEF,linker, loopA′B′, loopB′C′, loopD′E′in gp130, and the regions loopA′B′, β-strand E′ in hIL-6R are interacted with the regions loopA′B′, β-strand E′ in gp130.

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冯健男,任蕴芳,倪长源,吴加金,沈倍奋. hIL-6·hIL-6Rα·gp130三元复合物的结构预测[J].生物化学与生物物理进展,2000,27(4):418-422

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  • 收稿日期:1999-07-22
  • 最后修改日期:1999-12-16
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