酵母基因内含子中二聚体寡核苷酸转录调控位点的统计分析
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国家自然科学基金资助项目(30360027)和云南大学理(工)科校级科研项目资助(2002T009XX).


Statistical Analysis of Dyad-like Transcriptional Regulatory Sites in The Introns of Yeast Genes
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This work was supported by grants from The National Natural Science Foundation of China (30360027) and The Natural Science Foundation of Yunnan University (2002T009XX).

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    摘要:

    对高效和低效转录酵母基因内含子序列中寡核苷酸的出现频率进行对照分析, 结果显示高效和低效内含子序列的结构有差异, 而且高效转录内含子序列含有较多潜在的转录因子结合位点. 观察实验获得的转录调控位点, 发现许多调控位点不是相邻接的寡核苷酸,而是由一对保守寡核苷酸构成, 这对寡核苷酸被一段长度固定的非保守区域间隔开. 于是对此形式的二聚体寡核苷酸(dyad)在高效和低效内含子序列中出现的频率进行统计比较分析,抽提出在高效内含子组出现的频率显著高于在低效内含子组出现频率的二聚体寡核苷酸, 分析这些二聚体寡核苷酸在两组内含子序列中的分布特征, 并对照实验结果, 这些二聚体寡核苷酸可能与基因转录的正调控有关.

    Abstract:

    A comparative analysis of the occurrence frequency of oligonucleotides in two sets of yeast genes with higher and lower transcription frequencies respectively has shown that the sequence structures of the two sets of introns are different. There are more potential binding sites in the introns of genes with higher transcription frequencies. After observing regulatory sites obtained by experimental analysis, many transcriptional regulatory sites in yeast consist of a pair of highly conserved oligonucleotides, spaced by a non-conserved region of fixed width (dyad). Therefore, dyad-like transcriptional regulatory sites are analyzed. Some dyads are extracted by statistical comparative analysis of the occurrence frequencies, whose occurrence frequencies in the set of introns with higher transcription frequencies are higher significantly than those in the set of introns with lower transcription frequencies. Analyzing the distribution of the extracted dyads in two sets of introns, and comparing with the regulatory sites revealed by experiments, these dyads are probably related to positive transcriptional regulation.

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胡俊,张静.酵母基因内含子中二聚体寡核苷酸转录调控位点的统计分析[J].生物化学与生物物理进展,2004,31(5):449-454

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  • 收稿日期:2003-11-05
  • 最后修改日期:2003-12-24
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