SPR生物传感器研究缺乏3′→5′核酸外切酶活性的DNA聚合酶对DNA的分子识别功能
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上海重点基础研究资助项目(04JC14081)


SPR Biosensor Study of The Molecular Recognition Between The DNA Polymerase Without 3′→5′ Exonuclease Activity With DNA
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This work was supported by a grant from The Major Basic Research Program of The Science and Technology Commission Foundation of Shanghai (04JC14081)

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    摘要:

    Taq聚合酶 (Taq pol)、失去核酸酶结构域的鼠白血病逆转录酶 (MMLV RT-) 和人源的聚合酶β(pol β) 缺少3′→5′外切核酸酶活性. 利用表面等离子激元共振 (SPR) 生物传感器,研究了Taq pol与引物末端完全匹配和含有1、2、3个错配碱基的DNA 模板-引物 (T-P) 的结合动力学,并分析比较了在“正确”或“错误”dNMP环境中Taq pol和引物末端完全匹配的DNA T-P的结合. 实验结果表明,随着引物末端错配碱基逐个增加,Taq pol和DNA的结合亲和力呈下降趋势,说明增强和引物末端完全匹配的DNA T-P的亲和力是Taq pol选择正确配对碱基的途径之一. 在 “错误”的dNMP环境中, Taq pol与DNA T-P的结合动力学能够用简单的1∶1 Langmuir模型进行拟合,但是MMLV RT-与DNA T-P的结合动力学可能存在构象变化. 而在“正确”的dNMP环境中,Taq pol或MMLV RT-与DNA T-P的结合符合构象变化模型,而且亲和力常数分别是无dNMP时的20倍和64倍,说明“正确”的dNMP诱导酶 (Taq pol或MMLV RT-) - DNA复合物发生构象变化,大大增强了酶-DNA复合物结合的紧密程度. 在存在大量dNMP的环境中, pol β与DNA T-P的结合动力学明显与缺乏dNMP时相异, pol β和DNA的亲和力显著增强.

    Abstract:

    Taq pol, MMLV- RT and human pol β are polymerases lack of 3′-5′ exonuclease activity. The Taq polymerase binding with DNA template-primer (T-P) with 1, 2, or 3 mismatched base/bases at the terminus of primer was studied by surface plasmon resonance (SPR) biosensor, comparing with the binding with full matched DNA T-P. The experiment showed that the affinity of Taq pol binding with DNA T-P decreases when the number of mismatched bases increased, indicating that Taq pol preferred to binding with matched DNA T-P. With “incorrect” dNMP, the kinetics of Taq pol binding with matched DNA T-P could be analyzed by 1∶1 Langmuir model while the kinetics of MMLV RT- binding with matched DNA T-P might involve conformation change. Conformation change model fitted well with Taq pol and MMLV- RT-DNA binding curves in the presence of “correct”dNMP. The binding affinity was 20 times and 64 times higher than that without dNMP, respectively, indicating “correct” dNMP induced the conformation change of polymerse-DNA complex and enhanced the binding tightness. In the presence of dNMP, the kinetics of pol β binding with DNA T-P changed significantly and pol β grasped DNA closely.

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吴 蕾,黄明辉,赵建龙,杨梦苏. SPR生物传感器研究缺乏3′→5′核酸外切酶活性的DNA聚合酶对DNA的分子识别功能[J].生物化学与生物物理进展,2005,32(12):1130-1140

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