空间转录组技术研究进展
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上海交通大学生物医学工程学院,上海 200240

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国家重点研发计划(2018YFC1003500)和国家自然科学基金 (81972909)资助项目。


Advances in Spatial Transcriptome Technologies
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上海交通大学生物医学工程学院,上海 200240

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This work was supported by grants from The National Key Research and Development Program of China (2018YFC1003500) and The National Natural Science Foundation of China (81972909).

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    摘要:

    空间转录组技术旨在对细胞的基因表达进行定量测量,同时提供细胞在组织空间的具体位置信息。与传统的转录组技术相比,空间转录组技术能获得细胞在组织生理环境下真实的基因表达特征,以及与微环境的关系,进一步推进对正常和病理状态下细胞特性的理解。近年来,空间转录组技术的发展取得了重要的进展,检测的细胞通量、转录本数量和质量不断提高,空间定位信息更加准确全面。本文总结了四大类不同空间转录组技术的特点和应用,并比较了目前不同空间转录组技术的优缺点。

    Abstract:

    Spatial transcriptome technologies aim to quantitatively measure the gene expression of cells and provide information on the specific location of cells in tissue space. Compared with traditional transcriptome technologies, the spatial transcriptome technologies can obtain the true gene expression characteristics of cells in the tissue in physiological environment and its relationship with the microenvironment, further advancing the understanding of cell characteristics in normal and pathological states. In recent years, significant progress has been made in the development of spatial transcriptome technologies. The cell throughput, detected quantity and quality of transcripts have been continuously improved, and the spatial location information has become more accurate and comprehensive. This paper reviews the development and applications of spatial transcriptome technologies, which were classified into 4 major categories based on in situ hybridization, high-throughput sequencing, in situ sequencing, and live cell barcodes, respectively. Each of them has its advantages and disadvantages so that should be applied in different situations, and it is foreseeable that these spatial transcriptome technologies will continue to be improved, including preventing RNA degradation, improving detection throughput and efficiency, reducing costs, and obtaining complete spatial single-cell transcriptomes. At the same time, based on the acquisition of cell spatial information, future spatial transcriptome technologies will be combined with the dimension of time, further improve the level of transcriptome research from the perspective of spatiotemporal transcriptome, and continuously deepen the understanding of the true characteristics of tissue cells, so as to advance the understanding of developmental processes, cancer and other malignant diseases and the development of new treatments.

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危莹,张小丹,胡苗苗,吴忠琴,程酩,郭妍.空间转录组技术研究进展[J].生物化学与生物物理进展,2022,49(3):561-571

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历史
  • 收稿日期:2021-01-11
  • 最后修改日期:2021-05-24
  • 接受日期:2021-07-13
  • 在线发布日期: 2022-03-21
  • 出版日期: 2022-03-20