物体表面灰尘采集及DNA提取方法优化研究
作者:
作者单位:

1)中国人民公安大学侦查学院,北京 100038;2)公安部鉴定中心,法医遗传学公安部重点实验室,北京 100038;3)昆明医科大学法医学院,昆明 650500;4)福建省公安厅刑事技术总队,福州 350003;5)新疆生产建设兵团公安局,乌鲁木齐 830001

作者简介:

叶健 Tel: 010-83752807, E-mail: yejian77@126.com康克莱 Tel: 010-83752707, E-mail: kang_kl@yeah.netYE Jian. Tel: 86-10-83752807, E-mail: yejian77@126.comKANG Ke-Lai. Tel: 86-10-83752707, E-mail: kang_kl@yeah.net

通讯作者:

中图分类号:

基金项目:

公安部鉴定中心基本科研业务费(2022JB022)和公安部科技强警基础工作计划(2023JC14)资助项目。


Optimization of Dust Collection and DNA Extraction Methods on Object Surfaces
Author:
Affiliation:

1)School of Investigation, People’s Public Security University of China, Beijing100038, China;2)Key Laboratory of Forensic Genetics, Institute of Forensic Science, Ministry of Public Security, Beijing100038, China;3)School of Forensic Medicine, Kunming Medical University, Kunming650500, China;4)Forensic Science Division of Fujian Province Public Security Department, Fuzhou350003, China;5)XPCC Public Security Bureau, Urumqi830001, China

Fund Project:

This work was supported by grants from the Institute of Forensic Science, Ministry of Public Security of China (2022JB022) and Ministry of Public Security of China (2023JC14).

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    目的 灰尘作为法庭科学极具特色和应用价值的物证,其中包含丰富的环境DNA信息,逐渐成为领域内的前沿研究热点。然而,作为办案应用中的关键基础环节,从法庭科学领域实际应用出发的物体表面灰尘的采集及DNA提取研究,仍亟待开展。方法 使用Copan Liquid Amies Elution Swab拭子擦拭物体表面采集灰尘,将采集样品管内拭子头、沉淀、上清液分别提取DNA,评估DNA含量从而选定应处理和裂解的样品管内成分。按照5种不同采样面积(25~400 cm2)采集灰尘样本并检测DNA浓度,确定合适的采样面积。比较3种商业化DNA提取试剂盒对灰尘样本的提取效果,并检测评估提取的灰尘DNA片段大小以及是否含人源DNA,同时通过16S rDNA扩增子测序分析物体表面灰尘DNA中的细菌信息,从而建立灰尘DNA提取产物的质量控制方法。针对DNA提取中的细胞裂解关键步骤,比较评估在不同的细胞裂解方式以及震荡裂解次数下提取DNA的量,从而建立适合灰尘DNA提取的细胞裂解方法。结果 灰尘采样管内沉淀与拭子头为DNA的主要来源部位,后续提取时均应纳入处理。灰尘的采样面积与灰尘DNA浓度呈正相关,且灰尘采样面积宜大于5×5 cm2。使用DNeasy PowerSoil Pro试剂盒可以获得较高的DNA产量,同时3种DNA提取试剂盒提取的DNA片段大小无显著差异,从上述灰尘样本提取的DNA中未检出人源DNA,而物体表面灰尘DNA中含有细菌DNA,并且不同采样点之间的微生物物种组成存在差异。此外,使用生物样品均质器进行研磨裂解4 min(2 min×2次)时,得到的灰尘DNA浓度最高。结论 灰尘DNA的提取与采样面积、提取试剂盒、裂解方式均有关,建立完整且适合的灰尘DNA提取方案至关重要。这不仅为研究挖掘灰尘中的环境DNA数据打下基础,还为环境样本的实际办案应用提供了方法参考。

    Abstract:

    Objective Dust has steadily emerged as a frontier research in the field of forensic science because it is a material evidence with significant features and application potential that carries rich environmental DNA information. However, as a crucial foundational step in forensic applications, the collection and DNA extraction research of dust on object surfaces from the perspective of practical applications in forensic science are still in urgent need of development.Methods Dust was collected from object surfaces using a Copan Liquid Amies Elution Swab. DNA was extracted separately from the swab head, sediment, and supernatant within the sample collection tube to evaluate DNA content, thereby determining which components within the tube should be processed and lysed. Dust samples were collected according to five different sampling areas (25-400 cm2) and the DNA concentration was measured to determine the optimal sampling area. The extraction efficiency of three commercial DNA extraction kits for dust samples was compared. The size of the DNA fragments extracted from the dust was analyzed, as well as the presence of human DNA. Additionally, 16S rDNA amplicon sequencing was used to analyze the bacterial information in dust DNA from object surfaces. This process aimed to establish a quality control method for dust DNA extraction. Regarding the critical step of cell lysis in DNA extraction, the quantity of DNA extracted was compared and evaluated under different cell lysis methods and varying vortexing times. This was done to establish an appropriate cell lysis method for dust DNA extraction.Results The sediment and swab head in the dust sampling tube are the primary sources of DNA, and both should be included in subsequent extraction processes. The sampling area of dust is positively correlated with dust DNA concentration, and it is recommended that the sampling area be larger than 5×5 cm2. Using the DNeasy PowerSoil Pro kit can yield a higher amount of DNA. Additionally, there were no significant differences in the sizes of DNA fragments extracted by the three different DNA extraction kits. No human DNA was detected in the DNA extracted from the dust samples, while bacterial DNA was present in the dust from object surfaces. Furthermore, there were differences in microbial species composition between different sampling points. Additionally, using a biological sample homogenizer to grind and lyse for 4 min (2 min× 2 times) resulted in the highest concentration of dust DNA.Conclusion The extraction of dust DNA is influenced by the sampling area, extraction kits, and lysis methods. It is crucial to establish a comprehensive and suitable dust DNA extraction scheme. This not only lays the foundation for researching and extracting environmental DNA data from dust, but also provides a methodological reference for forensic case work involving environmental samples.

    参考文献
    相似文献
    引证文献
引用本文

杨琪,彭加金,王乐,卢颀,梅宏成,戈文东,张涛,季安全,叶健,康克莱.物体表面灰尘采集及DNA提取方法优化研究[J].生物化学与生物物理进展,2024,51(12):3310-3320

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:2023-11-05
  • 最后修改日期:2024-06-11
  • 接受日期:2024-06-12
  • 在线发布日期: 2024-06-12
  • 出版日期: 2024-12-20