蛋白质结构型的定义和识别
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国家自然科学基金资助项目(39960023).


The Definition and Recognition of Protein Structural Class
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This work was supported by a grant from the National Natural Sciences Foundation of China (39960023).

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    摘要:

    提出紧结构域的概念,由二级结构序列中一段或几段连续的α螺旋和β折叠构成的空间紧密堆集的最大折叠体称为紧结构域.利用3种紧结构域(α域,β域和α/β域)定义球蛋白的5种结构型:α型蛋白,β型蛋白,α/β型蛋白,多域蛋白和ζ型蛋白.将1 261个代表性的蛋白质(1 022家族)进行分类,并和SCOP库的分类做了比较.进行了删去序列冗余的分析.在此基础上提出结构型的预测方案,成功率在82%~85%.

    Abstract:

    The concept of compact structural domain (CSD) is proposed which means a maximal compactly - packing - fold composed of α helices and β sheets in secondary structure sequence. There are three kinds of CSDs, namely α domain, β domain and α/β domain. Then five classes of protein are defined. The mainly- α protein is constructed from one or several α domains, the mainly-β protein is constructed from one or several β domains, the α/β protein is constructed from one or several α/β domains, the multi-domain protein is constructed from two or more kinds of CSDs, and the ζ-class protein does not contain any CSD. A database of 1 261 globular proteins is classified into five classes. The classification is compared with SCOP's. The analysis of redundancy-deletion has been done. A prediction rule on structural class is given which is the generalization of previous work. The successful rate of the prediction is higher than 82%.

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李晓琴,罗辽复.蛋白质结构型的定义和识别[J].生物化学与生物物理进展,2002,29(1):124-127

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  • 收稿日期:2001-05-14
  • 最后修改日期:2001-06-28
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