人PRL-3基因启动子的克隆及转录因子Snail结合位点的初步鉴定
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国家自然科学基金资助项目(30500241, 30670968和30700286).


Cloning of Human PRL-3 Gene Promoter and Preliminary Identification of Its Snail Binding Site
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This work was supported by grants from The National Natural Science Foundation of China (30500241,30670968 and 30700286).

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    摘要:

    促肝细胞再生磷酸酶-3 (PRL-3)是重要的肿瘤转移相关基因,其转录调控机制一直未被阐明. 应用TRED在线分析系统共获得3种可能的人PRL-3基因启动子区域.通过与人基因组序列进行比对,发现其中3号启动子序列距离人PRL-3基因距离最近,位于该基因上游约1 kb的DNA区域,与5′端非翻译区域邻接.在线Consite分析系统发现,-500 bp至-451 bp之间存在Snail结合的核心寡核苷酸序列CACCTG. 运用分子克隆的方法获得PRL-3基因启动子2段区域 -699 bp至299 bp及 -642 bp至 -383 bp区域,后者具有Snail结合位点核心寡核苷酸序列CACCTG. 构建具有荧光素酶报告基因的pGL3载体并检测其启动子活性.-699~299 bp区域与-642~-383 bp区域的DNA片段在SW480、SW620、CNE2、293A细胞中均具有启动子活性,其中含有Snail结合位点核心寡核苷酸序列CACCTG的短片段活性强于较完整的序列. 染色质免疫沉淀结合PCR扩增技术及凝胶迁移阻滞实验确定PRL-3基因启动子区域具有Snail结合位点.研究确定,PRL-3基因的启动子位于转录起始位点上游700 bp与下游300 bp的DNA区域,PRL-3基因启动子存在转录因子Snail结合元件.

    Abstract:

    PRL-3 is a key gene related to metastasis of colorectal carcinoma. However, it is known little about the possible regulatory mechanisms of PRL-3 gene expression. There were three possible promoter regions predicted by TRED, a promoter prediction software,which were all located in the upstream regions of PRL-3 gene. One of PRL-3 gene candidate promoters was located in the region of about -1kb upstream proximal to 5′ UTR of PRL-3 gene. Many possible transcription factor binding sites such as Snail, n-MYC, ARNT, E74A, NF-kappaB, NRF-2 and AML-1 were predicted in the region by Consite, a promoter analysis web system. Interestingly, a 5′ CACCTG 3′ core sequence and other related sequences of snail binding sites were found in promoter region of PRL-3 genes. Two PRL-3 gene promoters between -699 to 299 nt and between -642 to -383 nt were cloned into pGL3 vector with luciferase report gene. Both of them had promoter activities in four different cell lines including colorectal carcinoma cell lines SW480 and SW620, nasopharyngeal carcinoma cell line CNE2 and human embryo kidney cell line 293A. Interestingly, the luciferase activities of the short DNA fragmentations with Snail binding site′s core sequence 5′ CACCTG 3′ were higher than that of the longer one. PRL-3 promoter obtaining the 5′ CACCTG 3′ core sequence of Snail binding sites, was validated to bind to snail by chromatin immunoprecipitation (CHIP) analysis and electrophoretic mobility shift assay (EMSA) in SW480 cells. The data suggested that Snail was involved in regulation of PRL-3.

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周军,李建明,杨发达,柳玉红,丁彦青.人PRL-3基因启动子的克隆及转录因子Snail结合位点的初步鉴定[J].生物化学与生物物理进展,2008,35(2):187-194

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  • 收稿日期:2007-06-07
  • 最后修改日期:2007-10-09
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  • 在线发布日期: 2007-11-08
  • 出版日期: 2008-02-20