人类蛋白质结构互作网络——结构域对网络拓扑与蛋白质功能的影响
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哈尔滨医科大学研究生创新基金资助项目(HCXS2009007), 黑龙江省自然科学基金项目(D2007-48, JC200711), 哈尔滨医科大学医学基础学科创新群体基金项目和国家自然科学基金资助项目(30571034)


Human Protein Structural Interaction Network:Domain Effects on Network Topology and Protein Function
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This work was supported by grants from The Master Innovation Funds of Harbin Medical University (HCXS2009007), The Natural Science Foundation of Heilongjiang Province (D2007-48, JC200711), Population Innovation Funds of Harbin Medical University and The National Natural Science Foundation of China(30571034)

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    摘要:

    高通量的蛋白质互作数据与结构域互作数据的出现,使得在蛋白质组学领域内研究人类蛋白质结构互作网络,进一步揭示蛋白质结构与功能间的潜在关系成为可能.蛋白质上广泛分布的结构域被认为是蛋白质结构、功能以及进化的基本功能单元.然而,结合蛋白质的结构信息(例如蛋白质结构域数目、长度和覆盖率等)来研究这些表象后的内部机制仍然面临着挑战.将蛋白质分为单结构域蛋白质与多结构域蛋白质,并进一步结合蛋白质互作信息与结构域互作信息构建了人类蛋白质结构互作网络;通过与人类蛋白质互作网络进行比较,研究了人类蛋白质结构互作网络的特殊结构特征;对于单结构域蛋白质与多结构域蛋白质,分别进行了功能富集分析、功能离散度分析以及功能一致性分析等.结果发现,将结构域互作信息综合考虑进来后,人类蛋白质结构互作网络可以提供更多的单纯的蛋白质互作网络无法提供的细节信息,揭示蛋白质互作网络的复杂性.

    Abstract:

    Availability of high-throughput protein-protein interaction and domain-domain interaction information make it possible to study human structural interaction network, and uncover the inner relationship between structure and function of proteins in proteomics area.The widely-distributed domains are thought to affect structure and function of proteins.However, it is still a challenge to investigate potential mechanisms of these effects combing the structural information (e.g domain number, domain length and domain coverage).The proteins were classified into single- or multi- domain proteins, then human protein structural interaction network was constructed with classification information by integrating the protein-protein interaction and the domain- domain interaction data.Furthermore, comparing with the protein-protein interaction network, specific structure characteristics of human protein structural interaction network were studied. And with respect to single-/multi- domain proteins, function enrichment analysis was carried out for their functions. With domain-domain interaction considered, human protein structural interaction network could provide more detailed information distinct from networks based on protein-protein interaction datasets only, and might reveal the underlying complexity of protein-protein interaction network from the perspective of protein classification. Human protein structural interaction network could exploit domain information to provide additional and crucial protein interaction details necessary for understanding what human structural interactions imply.

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陈丽娜,王倩,尚玉奎,张良才,孙钊,何伟明,赵研,李琬,王宏,何月涵,李霞.人类蛋白质结构互作网络——结构域对网络拓扑与蛋白质功能的影响[J].生物化学与生物物理进展,2010,37(5):517-526

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  • 收稿日期:2009-10-30
  • 最后修改日期:2010-01-25
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  • 在线发布日期: 2010-02-04
  • 出版日期: 2010-05-20