苦绳(Dregea sinensis)中多氧化孕烷糖苷与免疫蛋白相互作用的研究
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1) 北京理工大学生命学院,生物医药成分分离与分析北京市重点实验室,北京 100081;2) 军事科学院军事医学研究院辐射医学研究所,北京 100850

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国家自然科学基金(81503353)和国家科技部仪器专项(2012YQ040140)资助项目。


Study on The Interaction of Polyoxypregnane Glycosides From Dregea sinensis With Immune Proteins
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Affiliation:

1) Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, School of Life Science, Beijing Institute of Technology, Beijing 100081, China;2) Institute of Radiation Medicine, Academy of Millitary Medical Sciences of Academy of Millitary Science, Beijing 100850, China

Fund Project:

This work was supported by grants from The National Natural Science Foundation of China (81503353) and National Major Scientific Instruments and Equipments Development Project (2012YQ040140).

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    摘要:

    目的 基于化学结构特点研究植物苦绳(Dregea sinensis)中多氧孕烷糖苷的生物活性,以及化合物分子与靶蛋白分子间的作用机理。方法 本研究采用分子对接和表面等离子体共振方法,对191个多氧化孕烷糖苷类成分(>800 u)进行了免疫活性及其与免疫蛋白的动力学评价。结果 通过分子对接方法筛选出7个配体分子(6182330787980)和3个免疫相关蛋白(IL-2Rα、TLR4和TNF-α)。研究表明,化合物3078在SPR实验中与靶蛋白IL-2Rα和TLR4具有显著的结合趋势,与IL-2Rα的结合常数KD分别为2.41×10-6和2.14×10-6 mol/L,与TLR4则分别为1.96×10-5和5.60×10-6 mol/L。分子动力学研究进一步表征SPR阳性分子618307880与靶蛋白之间的相互作用基团。结论 研究揭示多氧化孕烷糖苷类成分可以通过形成氢键和Pi-Pi相互作用与靶蛋白结合。研究内容对快速评价多氧化孕烷糖苷类成分的活性具有重要意义,为揭示低丰度药效物质的潜在作用机制进行了有益探索。

    Abstract:

    Objective Based on chemical structural characteristics, the bioactivity of polyoxypregnane glycosides from Dregea sinensis, and the molecular interaction between compounds and targeted proteins were investigated.Methods The bioactive screening of 191 polyoxypregnane glycosides (>800 u) , and the kinetic evaluation on human immune-related proteins was carried out by molecular docking and SPR experiment.Results Seven compounds (6, 18, 23, 30, 78, 79, and 80) and 3 immune-related proteins (IL-2Rα, TLR4, and TNF-α) were selected through virtual screening. Compounds 30 and 78 showed the significant binding tendency with IL-2Rα and TLR4 in SPR experiment, and KD values with IL-2Rα were 2.41×10-6 and 2.14×10-6 mol/L, meanwhile KD values with TLR4 were 1.96×10-5 and 5.60×10-6 mol/L, respectively. The interactions between targeted proteins and compounds were further characterized by discovery studio. The analysis of molecular docking revealed the binding pocket residues for SPR-positive molecules 6, 18, 30, 78, and 80.Conclusion The result indicated these glycosides could bind to targeted proteins through forming hydrogen bonds and Pi-Pi interactions. The study is meaningful for bioactive evaluation of polyoxypregnane glycosides, and provides valuable exploration to the underlying mechanisms of effective compounds with low abundance.

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王智,宋娟,戴荣继,邓玉林,吕芳.苦绳(Dregea sinensis)中多氧化孕烷糖苷与免疫蛋白相互作用的研究[J].生物化学与生物物理进展,2022,49(9):1795-1801

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  • 收稿日期:2021-12-13
  • 最后修改日期:2022-09-10
  • 接受日期:2022-01-25
  • 在线发布日期: 2022-09-21
  • 出版日期: 2022-09-20
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