Cloning of human NPCEDRG core promoter and preliminary identification of its CCAAT/NFY binding site
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This work was supported by grants from The National Natural Science Foundation of China (30772401) and Scientific Research Fund of Hunan Provincial Health Department (B2007006)

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    Abstract:

    NPCEDRG is an NPC associated suppressive gene cloned by positional candidate cloning strategy. Its transcriptional down-expression has been shown in the cell lines and primary tumor tissues of NPC. Reintroduction of NPCEDRG into CNE2, a cell line derived from NPC, was effective to induce cell differentiation, control cell growth, and regulate the cell cycle. To uncover the molecular mechanisms underlying down-expression of NPCEDRG in NPC cells, bioinformatics approaches and functional assays in different tumor cell lines were used to identify and characterize the NPCEDRG core promoter and cis-acting elements. The conserved region from -180 to +235 bp was found in the potential promoter among 6 vertebrate species by the ECR browser, and there have several potential binding sites for transcription factors, such as CCAAT/NFY, STAT1 and SP1. To characterize the NPCEDRG core promoter, transient luciferase and/or EGFP reporter assay were carried out with the construct pGL3-en138. The results demonstrated that the core promoter is located at the conserved region from -146 to -8 nucleotides. Gel shift assay revealed the specific binding of some nuclear proteins to probes containing a putative CCAAT/NFY site,suggesting that the CCAAT/NFY site contributes to the regulation of NPCEDRG gene expression.

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HOU De-Fu, GUAN Yong-Jun, GUAN Rui, OUYANG Yong-Mei, YU Yan-Hui, CHEN Zhu-Chu. Cloning of human NPCEDRG core promoter and preliminary identification of its CCAAT/NFY binding site[J]. Progress in Biochemistry and Biophysics,2011,38(8):713-723

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History
  • Received:December 22,2010
  • Revised:April 06,2011
  • Accepted:
  • Online: April 13,2011
  • Published: August 20,2011