Study on The Interaction of Polyoxypregnane Glycosides From Dregea sinensis With Immune Proteins
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1) Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, School of Life Science, Beijing Institute of Technology, Beijing 100081, China;2) Institute of Radiation Medicine, Academy of Millitary Medical Sciences of Academy of Millitary Science, Beijing 100850, China

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This work was supported by grants from The National Natural Science Foundation of China (81503353) and National Major Scientific Instruments and Equipments Development Project (2012YQ040140).

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    Abstract:

    Objective Based on chemical structural characteristics, the bioactivity of polyoxypregnane glycosides from Dregea sinensis, and the molecular interaction between compounds and targeted proteins were investigated.Methods The bioactive screening of 191 polyoxypregnane glycosides (>800 u) , and the kinetic evaluation on human immune-related proteins was carried out by molecular docking and SPR experiment.Results Seven compounds (6, 18, 23, 30, 78, 79, and 80) and 3 immune-related proteins (IL-2Rα, TLR4, and TNF-α) were selected through virtual screening. Compounds 30 and 78 showed the significant binding tendency with IL-2Rα and TLR4 in SPR experiment, and KD values with IL-2Rα were 2.41×10-6 and 2.14×10-6 mol/L, meanwhile KD values with TLR4 were 1.96×10-5 and 5.60×10-6 mol/L, respectively. The interactions between targeted proteins and compounds were further characterized by discovery studio. The analysis of molecular docking revealed the binding pocket residues for SPR-positive molecules 6, 18, 30, 78, and 80.Conclusion The result indicated these glycosides could bind to targeted proteins through forming hydrogen bonds and Pi-Pi interactions. The study is meaningful for bioactive evaluation of polyoxypregnane glycosides, and provides valuable exploration to the underlying mechanisms of effective compounds with low abundance.

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WANG Zhi, SONG Juan, DAI Rong-Ji, DENG Yu-Lin, Lü Fang. Study on The Interaction of Polyoxypregnane Glycosides From Dregea sinensis With Immune Proteins[J]. Progress in Biochemistry and Biophysics,2022,49(9):1795-1801

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History
  • Received:December 13,2021
  • Revised:September 10,2022
  • Accepted:January 25,2022
  • Online: September 21,2022
  • Published: September 20,2022