1.湖南医药学院检验医学院,湖南省中药合成生物学重点实验室,怀化 418000;2.#)桂林医科大学广西糖尿病系统医学重点实验室,桂林 541199;3.#)邵东市人民医院,邵东市人民医院-明舜制药转化医学联合实验室,邵东 422800;4.#)桂林医科大学附属医院,广西肝损伤与修复分子医学重点实验室,桂林 541001;5.#)湖南补天药业有限公司专家工作站,长沙 410000
湖南省自然科学基金(批准号:2023JJ50440)、广西自然科学基金(批准号:2025GXNSFHA069221)、湖南省教育厅科学研究基金(批准号:22A0707)、国家级大学生创新创业训练计划(批准号:S202212214001)、广西卫健委鞘脂代谢相关疾病基础研究重点实验室(批准号:GKLBRSMR-K202403),以及邵东市人民医院横向合作科研项目(批准号:2023SDHX02)
1.Hunan Provincial Key Laboratory for Synthetic Biology of Traditional Chinese Medicine, School of Medical Laboratory Science, Hunan University of Medicine, Huaihua 418000, China;2.#)Guangxi Key Laboratory of Diabetic Systems Medicine, Guilin Medical University, Guilin 541199, China;3.#)Joint Laboratory of Translational Medicine by Shaodong People's Hospital & Hunan Mingshun Pharmaceutical Co., Ltd, Shaodong People's Hospital, Shaodong 422800, China;4.#)Guangxi Key Laboratory of Molecular Medicine in Liver Injury and Repair, the Affiliated Hospital of Guilin Medical University, Guilin 541001, China;5.#)Expert Workstation of Hunan Butian Pharmaceutical Co., Ltd., Changsha 410000, China
This work was supported by grants from the Hunan Provincial Natural Science Foundation (2023JJ50440), the Natural Science Foundation of Guangxi (2025GXNSFHA069221), the Scientific Research Fund of Hunan Provincial Education Department (22A0707), the National College Student Innovation and Entrepreneurship Training Program (S202212214001), the Guangxi Health Commission Key Laboratory of Basic Research in Sphingolipid Metabolism Related Diseases (GKLBRSMR-K202403), and Horizontal Cooperation Research Project of Shaodong People's Hospital (2023SDHX02).
目的: 本研究旨在通过网络药理学、分子动力学与实验验证等方法,探究茯苓酸(Pachymic acid, PA)在治疗神经母细胞瘤(Neuroblastoma, NB)中的潜在分子靶点及其作用机制。方法:本研究首先基于网络药理学方法筛选PA可能作用于NB的靶点,随后结合分子对接、分子动力学(MD)模拟、MM/PBSA自由能计算及RT-qPCR、Western blot实验进行多维度验证。结果: CCK-8实验显示,PA对NB细胞具有浓度依赖性的抑制作用。KEGG通路富集分析提示,PA的抗NB作用可能通过调控PI3K-Akt、MAPK及Ras等信号通路实现。分子对接及分子动力学模拟结果表明,PA可与AKT1、EGFR、SRC及HSP90AA1等核心靶蛋白稳定结合。RT-qPCR与Western blot分析进一步证实,PA处理可显著下调AKT1、EGFR及SRC的mRNA和蛋白表达水平,同时上调HSP90AA1的表达水平。结论: 本研究表明,茯苓酸可能通过抑制AKT1、EGFR和SRC的表达,调控PI3K/AKT信号通路,从而发挥其抗神经母细胞瘤作用。研究结果为PA在NB治疗中的潜在应用提供了重要的实验依据。
Abstract Background Traditional Chinese medicine (TCM) constitutes a valuable cultural heritage and an important source of antitumor compounds. Poria (Poria cocos (Schw.) Wolf), the dried sclerotium of a Polyporaceae fungus, was first documented in Shennong’s Classic of Materia Medica and has been used therapeutically and dietarily in China for millennia. Traditionally recognized for its diuretic, spleen-tonifying, and sedative properties, modern pharmacological studies confirm that Poria exhibits antioxidant, anti-inflammatory, antibacterial, and antitumor activities. Pachymic acid (PA; a triterpenoid with the chemical structure 3β-acetyloxy-16α-hydroxy-lanosta-8,24(31)-dien-21-oic acid), isolated from Poria, is a principal bioactive constituent. Emerging evidence indicates PA exerts antitumor effects through multiple mechanisms, though these remain incompletely characterized. Neuroblastoma (NB), a highly malignant pediatric extracranial solid tumor accounting for 15% of childhood cancer deaths, urgently requires safer therapeutics due to the limitations of current treatments. Although PA shows multi-mechanistic antitumor potential, its efficacy against NB remains uncharacterized. Objective To systematically investigate the potential molecular targets and mechanisms underlying the anti-NB effects of PA by integrating network pharmacology-based target prediction with experimental validation of multi-target interactions through molecular docking, dynamic simulations, and in vitro assays. This study aimed to establish a novel perspective on PA’s antitumor activity and explore its potential clinical implications for NB treatment by integrating computational predictions with biological assays. Methods This study employed network pharmacology to identify potential targets of PA in NB, followed by validation using molecular docking, molecular dynamics simulations, MM/PBSA free energy analysis, RT?qPCR and Western blot experiments. Network pharmacology analysis included target screening via TCMSP, GeneCards, DisGeNET, SwissTargetPrediction, SuperPred, and PharmMapper, followed by topological analysis using Cytoscape. Molecular docking was conducted using AutoDock Vina, with the binding pocket defined based on crystal structures. MD simulations were performed for 100 ns using GROMACS, and RMSD, RMSF, SASA, and hydrogen bonding dynamics were analyzed. MM/PBSA calculations were carried out to estimate the binding free energy of each protein-ligand complex. In vitro validation included RT-qPCR and Western blot, with GAPDH used as an internal control. Results The results of the CCK-8 assay demonstrated a concentration-dependent inhibitory effect of PA on NB cell viability. GO analysis suggested that the anti-NB activity of PA might involve cellular response to chemical stress, vesicle lumen, and protein tyrosine kinase activity. KEGG pathway enrichment analysis suggested that the anti-NB activity of PA might involve the PI3K/Akt, MAPK, and Ras signaling pathways. Molecular docking and MD simulations revealed stable binding interactions between PA and the core target proteins AKT1, EGFR, SRC, and HSP90AA1. RT?qPCR and Western blot analyses further confirmed that PA treatment significantly decreased the mRNA and protein expression of AKT1, EGFR, and SRC while increasing the HSP90AA1 mRNA and protein levels. Conclusion This study suggests that PA may exert its anti-NB effects by inhibiting AKT1, EGFR, and SRC expression, potentially modulating the PI3K/Akt signaling pathway. These findings provide crucial evidence supporting PA's development as a therapeutic candidate for NB. Key words: Pachymic acid; Network pharmacology; molecular dynamics simulation
刘航,祝雨欣,郭思霖,潘信运,谢远杰,廖思聪,戴鑫汶,申平,肖玉波.网络药理学结合实验验证揭示茯苓酸治疗神经母细胞瘤的作用机制[J].生物化学与生物物理进展,,():
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