1.北京工业大学 化学与生命科学学院 环境与病毒肿瘤学北京市重点实验室;2.军事科学院 军事医学研究院 前沿生物技术国家级重点实验室
国家自然科学基金(32270823)资助项目 项目名称:胰岛GP73调控胰岛素分泌的机制研究,国家自然科学基金
1.Beijing University of Technology, College of Chemistry and Life Sciences, Beijing Key Laboratory of Environmental and Viral Oncology, Beijing 100124;2.Institute of Biotechnology, Academy of Military Medical Sciences, Laboratory of Advanced Biotechnology, Beijing 100071,China;3.2Institute of Biotechnology, Academy of Military Medical Sciences, Laboratory of Advanced Biotechnology, Beijing 100071,China
This work was supported by a grant from The National Science Foundation of China (32270823)
目的 邻近标记是近年来发展起来的一种研究活细胞内蛋白质相互作用的技术手段,能够捕捉细胞内瞬时和微弱的蛋白互作,以高尔基体膜蛋白GP73为研究对象,建立APEX2介导的邻近标记技术,进一步解析GP73蛋白的生理病理功能。 方法 构建GP73与APEX2融合表达的稳定细胞系,加入Biotin-phenol和H2O2催化GP73邻近蛋白的生物素化反应,Streptavidin磁珠富集生物素化的蛋白质,联合质谱检测GP73的互作蛋白,进一步进行生物信息学分析。 结果 结果表明,本研究成功构建了基于APEX2的邻近标记体系,鉴定出95个GP73的高置信度互作蛋白。富集分析表明GP73互作蛋白与Ribosome Binding分子学功能相关,提示其可能发挥调控细胞翻译的功能,进一步的实验验证了GP73与真核翻译起始因子EIF3的亚基EIF3G和EIF3I存在直接的相互作用,而SUnSET实验则证明了GP73能够促进细胞中的蛋白质翻译过程。 结论 本研究通过APEX2介导的邻近标记技术系统研究了GP73的相互作用蛋白,揭示了其调控细胞内蛋白质翻译的新功能,加深了对GP73蛋白功能的认知与理解,并为进一步解析复杂的生物大分子相互作用和生物学过程奠定了技术基础。
Objective Protein-protein interactions (PPIs) are fundamental to the execution of biological functions within living cells. However, traditional biochemical methods, such as co-immunoprecipitation (Co-IP), often fail to capture transient, weak, or membrane-associated interactions due to the stringent detergent requirements for cell lysis. Proximity labeling (PL) has emerged in recent years as a transformative technology for mapping the proteomes of specific subcellular compartments and identifying dynamic interactomes in situ. Golgi Protein 73 (GP73, also known as GOLPH2), a resident type II Golgi transmembrane protein, is a well-recognized clinical biomarker for liver diseases, including hepatocellular carcinoma (HCC). Despite its clinical significance, the comprehensive physiological and pathological functions of GP73 remain partially understood. This study aims to establish an APEX2-mediated proximity labeling system specifically targeting GP73 to map its interactome in a living cellular environment, thereby providing new insights into its molecular roles and regulatory mechanisms. Methods To achieve spatial specificity, we first constructed a stable cell line expressing a fusion protein consisting of GP73 and the engineered soybean peroxidase APEX2. The localization of the GP73-APEX2 fusion protein was validated to ensure it correctly targeted the Golgi apparatus. The proximity labeling reaction was initiated by incubating the cells with Biotin-phenol (BP) for 30 minutes, followed by a brief (1-minute) treatment with 1 mM hydrogen peroxide (H2O2). This catalytic reaction converts BP into highly reactive, short-lived biotin-phenoxyl radicals that covalently attach to endogenous proteins within a small labeling radius of the GP73-APEX2 enzyme. Subsequently, the cells were quenched, and biotinylated proteins were enriched using high-affinity Streptavidin-coated magnetic beads. The captured "neighbor" proteins were subjected to on-bead digestion and analyzed via Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) for high-throughput identification. Rigorous bioinformatics analysis, including Gene Ontology (GO) enrichment, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and protein-protein interaction network mapping, was performed to interpret the biological significance of the identified candidates. Results Our results demonstrate the successful establishment of a robust and sensitive APEX2-based proximity labeling system for GP73. We identified a total of 95 high-confidence interacting proteins that were significantly enriched in the GP73 proximity proteome compared to control groups. Bioinformatics analysis revealed that these interactors were predominantly associated with biological processes such as vesicular transport, protein localization, and, most notably, molecular functions related to "Ribosome Binding" and "Translation Regulation." This suggested an unexpected role for the Golgi-resident GP73 in the cellular translation machinery. To validate these findings, we performed targeted biochemical assays which confirmed a direct interaction between GP73 and the subunits of the eukaryotic translation initiation factor 3 (eIF3) complex, specifically EIF3G and EIF3I. Furthermore, functional validation using the Surface Sensing of Translation (SUnSET) assay—a non-radioactive method to monitor protein synthesis—revealed that the overexpression of GP73 significantly promoted global protein translation levels in the cell, whereas its depletion or inhibition resulted in reduced translation efficiency. Conclusion In conclusion, this study successfully utilized APEX2-mediated proximity labeling to provide the first systematic map of the GP73 interactome in living cells. Our findings uncover a novel, unconventional function of GP73 as a regulator of cellular protein translation, likely mediated through its interaction with the eIF3 complex. This discovery significantly broadens our understanding of the biological roles of GP73 beyond its traditional function in the Golgi apparatus and suggests that it may act as a bridge between Golgi-related trafficking and the protein synthesis machinery. Furthermore, the technical framework established in this study provides a valuable template for investigating other complex organelle-associated protein networks and resolving transient macromolecular interactions in various physiological and pathological contexts.
刘慕仪,张畅,杨孟欣,阎新龙,万禄明,魏从文.基于邻近标记技术建立GP73互作蛋白谱及初步分析[J].生物化学与生物物理进展,,():
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