基于构象工程的银基人工水解酶的构建及其催化机制研究
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上海大学纳米化学与生物学研究所,上海 200444

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国家自然科学基金(32371318)资助项目。


Construction of Silver Nanoparticle-based Artificial Hydrolases via Conformational Engineering and Study of Its Catalytic Mechanism
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Institute of Nanochemistry and Nanobiology, Shanghai University, Shanghai 200444, China

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This work was supported by a grant from The National Natural Science Foundation of China (32371318).

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    摘要:

    目的 本研究采用构象工程(conformational engineering,CE)技术,在银纳米颗粒(AgNP)上模拟α胰凝乳蛋白酶的活性位点,构建包括催化三联体、氧阴离子孔及底物结合位点的活性中心,制备高催化活性的人工水解酶,探索天然酶模拟和高性能人工酶设计的新思路。方法 以AgNP为骨架,通过CE使设计的多肽的关键催化残基位于α螺旋构象一侧,构建与α胰凝乳蛋白酶相似的催化活性中心。通过三氟乙醇诱导构象、Ag-S键稳定构象和冷冻干燥去除诱导剂三步法实现多肽构象的精准控制。圆二色谱用于证明α螺旋构象的形成与稳定;关键残基的突变结合停流动力学实验用于证明各关键残基的不可或缺,以及催化三联体、氧阴离子孔及底物结合位点之间的协同作用。结果 成功构建了高效的银基人工水解酶——Silverzyme。Silverzyme对4-硝基苯基乙酸酯表现出极高的水解活性,单位活性位点的催化反转数达到3.5 s-1,甚至超过了α胰凝乳蛋白酶。而且Silverzyme还能显著催化水解邻苯二甲酸二乙酯——一种被美国环保署列为环境优先污染物的、难以降解的非活化酯。结论 本文通过CE技术在AgNP表面实现对α胰凝乳蛋白酶的复杂催化中心的模拟,得到具有明确结构和清晰催化机制的高活性人工水解酶,显示了CE技术的广阔应用前景。

    Abstract:

    Objective This study employs a special conformational engineering (CE) technology to construct an α-chymotrypsin-like active center, which includes a catalytic triad, an oxyanion hole, and a substrate-binding site, on silver nanoparticles (AgNPs), thereby creating an AgNP-based artificial hydrolase with high catalytic activity. This study provides a new approach for the design of highly efficient artificial enzymes and enzyme-mimicking.Methods AgNPs were chosen as the scaffold to build the an α-chymotrypsin-like active center. A special CE procedure enables the designed peptide, Triad5, to adopt an α-helical conformation on AgNPs, with the key catalytic residues located on one side of the α-helix forming a catalytic active center with a catalytic triad, an oxyanion hole, and a substrate-binding site. The CE procedure consists of three steps, including conformation induction via trifluoroethanol (TFE), conformation stabilization on AgNPs via Ag-S bonds, and TFE removal via lyophilization. Circular dichroism (CD) spectra were used to confirm the formation and stabilization of the α-helix conformation. Mutations of the key residues combined with stopped-flow kinetic experiments were used to demonstrate the indispensability of each key residue and the synergistic effects among the catalytic triad, the oxyanion hole, and the substrate-binding site.Results CD spectra show that the designed Triad5 alone is in random coil conformation; when conjugated on AgNPs, Triad5 still remains largely unstructured; but after the CE treatment, Triad5 adopts a typical α-helical conformation on AgNPs as designed, thus produces an AgNP-based artificial hydrolase, Silverzyme. Silverzyme exhibits extremely high hydrolytic activity towards p-nitrophenyl acetate (p-NPA), with an extremely high catalytic turnover number per active site of 3.5 s-1, which is even higher than that of α-chymotrypsin. As a comparison, the AgNP-Triad5 conjugate without CE treatment shows much lower catalytic activity than Silverzyme, highlighting the important role of the right conformation of the active center for the catalytic activity and the power of the CE treatment. When the key residues of the catalytic triad of Silverzyme were mutated to alanine, the overall catalytic efficiency of this mutant dropped by about 2 orders of magnitude, unambiguously demonstrating the key role of the designed catalytic triad. Similarly, when the residues for the oxyanion hole were deleted, the mutant with the intact catalytic triad also showed significantly decreased catalytic activity, highlighting the indispensable role of the oxyanion hole for the catalytic activity. Unexpectedly, when both the catalytic triad and the oxyanion hole were kept intact, a slight change of the binding site also resulted in significantly decreased catalytic activity, indicating that the designed binding site is at the right position to align the substrate in the right orientation in the active center for catalytic hydrolysis. These results confirm the synergy among the catalytic triad, the oxyanion hole, and the substrate-binding site, indicating successful mimicking of the active center of α-chymotrypsin. Moreover, Silverzyme shows better thermal stability than α-chymotrypsin, and can even hydrolyze the tough non-activated ester diethyl phthalate, a priority pollutant by the United States Environmental Protection Agency (USEPA).Conclusion This study successfully mimicked the complex catalytic active center of α-chymotrypsin using a conformational engineering strategy, and produced a highly active artificial hydrolase with a well-defined structure and catalytic mechanism. The findings highlight the significant potential of conformational engineering.

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王燕,周彤彤,郭圆,王海芳,曹傲能.基于构象工程的银基人工水解酶的构建及其催化机制研究[J].生物化学与生物物理进展,2026,53(6):1684-1698 WANG Yan, ZHOU Tong-Tong, GUO Yuan, WANG Hai-Fang, CAO Ao-Neng. Construction of Silver Nanoparticle-based Artificial Hydrolases via Conformational Engineering and Study of Its Catalytic Mechanism[J]. Progress in Biochemistry and Biophysics,2026,53(6):1684-1698

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  • 收稿日期:2026-03-25
  • 最后修改日期:2026-06-03
  • 录用日期:2026-05-21
  • 在线发布日期: 2026-05-23
  • 出版日期: 2026-06-28
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