Progress in Protein-protein Docking Approaches
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This work was supported by grants from The National Natrual Sciences Foundation of China (30400087, 10574009), Beijing National Science Foundation (5042003) and The National Research Foundation for the Doctoral Program of Ministry of Education of China (2004005013)

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    Abstract:

    Protein-protein interactions and recognition are the focal and hot themes of the life science field in the 21st century. Molecular docking approach is the effective computer modeling technology in the study of this topic. Generally, the protein-protein docking procedure is composed of four stages: searching of the binding modes of the receptor and the ligand, filtering of docked modes to eliminate the irrational docked structures, optimizing the structures, evaluating the docked modes with the refined scoring function and ranking them to obtain the near-native structures. Combining the research group's works, in terms of the international and national progress of protein-protein docking approaches, the detailed review was made about the four stages mentioned above. Additionally, the existing major questions are analyzed and the prospects of the future study are made.

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LI Chun-Hua, MA Xiao-Hui, CHEN Wei-Zu, WANG Cun-Xin. Progress in Protein-protein Docking Approaches[J]. Progress in Biochemistry and Biophysics,2006,33(7):616-621

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History
  • Received:January 17,2006
  • Revised:March 02,2006
  • Accepted:
  • Online: July 17,2006
  • Published: July 20,2006